Getting started
API Reference
PhysioNetDataBase
NSRRDataBase
CPSCDataBase
PSGDataBaseMixin
AFDB
ApneaECG
CINC2017
CINC2018
CINC2020
CINC2021
LTAFDB
LUDB
MITDB
QTDB
CPSC2018
CPSC2019
CPSC2020
CPSC2021
SHHS
CACHET_CADB
SPH
BeatAnn
CINC2020Dataset
CINC2020Dataset.extra_repr_keys()
CINC2020Dataset.labels
CINC2020Dataset.persistence()
CINC2020Dataset.signals
CINC2021Dataset
CINC2021Dataset.empty()
CINC2021Dataset.extra_repr_keys()
CINC2021Dataset.from_extern()
CINC2021Dataset.labels
CINC2021Dataset.persistence()
CINC2021Dataset.reload_from_extern()
CINC2021Dataset.signals
CINC2021Dataset.to()
CPSC2019Dataset
CPSC2019Dataset.extra_repr_keys()
CPSC2019Dataset.labels
CPSC2019Dataset.signals
CPSC2021Dataset
CPSC2021Dataset.extra_repr_keys()
CPSC2021Dataset.load_preprocessed_data()
CPSC2021Dataset.persistence()
CPSC2021Dataset.plot_seg()
CPSC2021Dataset.reset_task()
LUDBDataset
LUDBDataset.extra_repr_keys()
LUDBDataset.labels
LUDBDataset.signals
MITDBDataset
MITDBDataset.extra_repr_keys()
MITDBDataset.persistence()
MITDBDataset.plot_seg()
MITDBDataset.reset_task()
ResNet
RegNet
VGG16
Xception
DenseNet
MobileNetV1
MobileNetV2
MobileNetV3
MultiScopicCNN
ECG_UNET
ECG_SUBTRACT_UNET
ECG_CRNN
ECG_SEQ_LAB_NET
RR_LSTM
GradCam
WeightedBCELoss
WeightedBCELoss.forward()
BCEWithLogitsWithClassWeightLoss
BCEWithLogitsWithClassWeightLoss.forward()
MaskedBCEWithLogitsLoss
MaskedBCEWithLogitsLoss.forward()
FocalLoss
FocalLoss.forward()
AsymmetricLoss
AsymmetricLoss.forward()
AugmenterManager
AugmenterManager.augmenters
AugmenterManager.extra_repr()
AugmenterManager.forward()
AugmenterManager.from_config()
AugmenterManager.rearrange()
Augmenter
Augmenter.forward()
Augmenter.get_indices()
BaselineWanderAugmenter
BaselineWanderAugmenter.extra_repr_keys()
BaselineWanderAugmenter.forward()
CutMix
CutMix.extra_repr_keys()
CutMix.forward()
LabelSmooth
LabelSmooth.extra_repr_keys()
LabelSmooth.forward()
Mixup
Mixup.extra_repr_keys()
Mixup.forward()
RandomFlip
RandomFlip.extra_repr_keys()
RandomFlip.forward()
RandomMasking
RandomMasking.extra_repr_keys()
RandomMasking.forward()
RandomRenormalize
RandomRenormalize.extra_repr_keys()
RandomRenormalize.forward()
StretchCompress
StretchCompress.extra_repr_keys()
StretchCompress.forward()
StretchCompressOffline
StretchCompressOffline.extra_repr_keys()
StretchCompressOffline.generate()
PreprocManager
PreprocManager.add_()
PreprocManager.extra_repr_keys()
PreprocManager.from_config()
PreprocManager.rearrange()
PreProcessor
PreProcessor.apply()
BandPass
BandPass.apply()
BandPass.extra_repr_keys()
BaselineRemove
BaselineRemove.apply()
BaselineRemove.extra_repr_keys()
Normalize
Normalize.apply()
Normalize.extra_repr_keys()
MinMaxNormalize
MinMaxNormalize.extra_repr_keys()
NaiveNormalize
NaiveNormalize.extra_repr_keys()
ZScoreNormalize
ZScoreNormalize.extra_repr_keys()
Resample
Resample.apply()
Resample.extra_repr_keys()
preprocess_multi_lead_signal()
preprocess_single_lead_signal()
PreprocManager.forward()
BandPass.forward()
BaselineRemove.forward()
Normalize.forward()
Resample.forward()
InputConfig
WaveformInput
FFTInput
SpectrogramInput
ClassificationOutput
MultiLabelClassificationOutput
SequenceTaggingOutput
SequenceLabellingOutput
WaveDelineationOutput
RPeaksDetectionOutput
LoggerManager
ClassificationMetrics
RPeaksDetectionMetrics
WaveDelineationMetrics
BaseTrainer
extend_predictions()
compute_output_shape()
compute_conv_output_shape()
compute_deconv_output_shape()
compute_maxpool_output_shape()
compute_avgpool_output_shape()
compute_sequential_output_shape()
compute_module_size()
default_collate_fn()
compute_receptive_field()
adjust_cnn_filter_lengths()
SizeMixin
CkptMixin
smooth()
resample_irregular_timeseries()
detect_peaks()
remove_spikes_naive()
butter_bandpass_filter()
get_ampl()
normalize()
normalize_t()
resample_t()
get_mask()
class_weight_to_sample_weight()
ensure_lead_fmt()
ensure_siglen()
masks_to_waveforms()
mask_to_intervals()
uniform()
stratified_train_test_split()
cls_to_bin()
generate_weight_mask()
overlaps()
validate_interval()
in_interval()
in_generalized_interval()
intervals_union()
generalized_intervals_union()
intervals_intersection()
generalized_intervals_intersection()
generalized_interval_complement()
get_optimal_covering()
interval_len()
generalized_interval_len()
find_extrema()
is_intersect()
max_disjoint_covering()
top_n_accuracy()
confusion_matrix()
ovr_confusion_matrix()
metrics_from_confusion_matrix()
compute_wave_delineation_metrics()
QRS_score()
add_docstring()
remove_parameters_returns_from_docstring()
default_class_repr()
ReprMixin
CitationMixin
get_kwargs()
get_required_args()
add_kwargs()
get_record_list_recursive3()
dict_to_str()
str2bool()
nildent()
get_date_str()
ecg_plot()
init_logger()
list_sum()
dicts_equal()
MovingAverage
Timer
timeout()
Examples
ECG Deep Learning Framework Implemented using PyTorch.
The system design is depicted as follows
Main Modules and Work Flow.
If you find this project useful, please cite our paper
@article{torch_ecg_paper, title = {{A Novel Deep Learning Package for Electrocardiography Research}}, author = {Hao Wen and Jingsu Kang}, journal = {{Physiological Measurement}}, doi = {10.1088/1361-6579/ac9451}, year = {2022}, month = {11}, publisher = {{IOP Publishing}}, volume = {43}, number = {11}, pages = {115006} }
Index
Module Index
Search Page